Yes. In the WYSIWYG editor, you can insert [shortcodes] as usual. Basic scenario: Insert Text Block from Content Elements section, click Edit button and in the editor, enter your shortcode or place it between existing text content.
Another option for adding 3rd party shortcodes is using Shortcode Mapper – available starting from version 4.1.0, which allows adding any type of shortcode to the element list for easy reuse.
There is also a way to add your own set of shortcodes (in case you want to extend WPBakery Page Builder or working on your theme). Please check advanced documentation page and (this is something that should be done by php developer).